PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G007900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 616aa    MW: 68463.7 Da    PI: 6.2657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G007900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12453499455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aqcoe7G007900.1.p 453 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 499
                        799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5752241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.73E-15452503No hitNo description
SuperFamilySSF474592.75E-18452513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18453512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10453499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16455504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00798560604No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKEEGLMGDG FWNEEDKAMV ITALGVQAFE YLMTSTVSSE CLVTTGGSDP NLQYKLSELV  60
ESPKASNFSW NYAIFWQISR SKSGELFLGW GDGYCREPKE GEESEPTFLV NGRLQEEETQ  120
QNMRKRVLQK LNTYFGGSEE ENYAIELDRV TDTEMFFLTS MYFSFPQGEG APGKAYRSGK  180
HVWLSNALKC STDYCVRSFL ARSAGIQTII LIPTDTGVVE LGSVRSIPEN LEVLQRIRSI  240
FSRVSSHVPV SPISVVSGIN ENATVPSYGT REAPDECHKI FGQDLNLGGS QLNEKLLAPK  300
VEFRPWDMFS NGNRLQFANN RKGPQGLSWP PNRGLKPATT LGAYASQPSA NSQHKFGNGS  360
IVLSNNLDHA HQSVGHGNAF SQRNHFQPPK QLPMQIDFSG GMTSRAPVGR SNAVDSEQSD  420
IEACKEDQSS PADERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS  480
KMDKASLLGD AITYITDLQK KLKDMESEKE NAGNPSREAV TSEINSASEN DKQAPNIDIQ  540
ALHDELIVRV SCPIDTHPAS KVIQAFREAQ VTVLESKIST GNDTVFHTFV VKPRESDLLT  600
KDKLIATFSR ETNNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-26482425193Transcription factor MYC3
4rs9_A1e-26482425193Transcription factor MYC3
4rqw_B1e-26482425193Transcription factor MYC3
4rqw_A1e-26482425193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434442RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242395.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242396.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242397.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242398.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242399.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ51e-179BH013_ARATH; Transcription factor bHLH13
TrEMBLA6NAB40.0A6NAB4_VITVI; Myc2 bHLH protein
TrEMBLF6I6F00.0F6I6F0_VITVI; Putative uncharacterized protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-176bHLH family protein